IL_6TPQ_053
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAGG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_053 not in the Motif Atlas
- Homologous match to IL_4WF9_052
- Geometric discrepancy: 0.1163
- The information below is about IL_4WF9_052
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6TPQ|1|U|C|1394
6TPQ|1|U|G|1395
6TPQ|1|U|A|1396
6TPQ|1|U|G|1397
6TPQ|1|U|G|1398
*
6TPQ|1|U|C|1407
6TPQ|1|U|G|1408
6TPQ|1|U|U|1409
6TPQ|1|U|A|1410
6TPQ|1|U|G|1411
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain r
- 50S ribosomal protein L34
- Chain u
- 50S ribosomal protein L28
Coloring options: