IL_6TPQ_058

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

6TPQ|1|U|U|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_058 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.2386

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6TPQ|1|U|A|1481
6TPQ|1|U|U|1482
6TPQ|1|U|A|1483
6TPQ|1|U|G|1484
*
6TPQ|1|U|U|1597
6TPQ|1|U|G|1598
6TPQ|1|U|A|1599
6TPQ|1|U|U|1600
6TPQ|1|U|U|1601

Current chains

Chain U

pre-23S rRNA

Nearby chains