IL_6TPQ_075

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

6TPQ|1|U|G|1828, 6TPQ|1|U|A|1843, 6TPQ|1|U|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_075 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1053

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6TPQ|1|U|U|1825
6TPQ|1|U|G|1826
6TPQ|1|U|C|1827
6TPQ|1|U|G|1828
6TPQ|1|U|A|1829
6TPQ|1|U|A|1830
6TPQ|1|U|G|1831
*
6TPQ|1|U|C|1840
6TPQ|1|U|G|1841
6TPQ|1|U|A|1842
6TPQ|1|U|A|1843
6TPQ|1|U|G|1844
6TPQ|1|U|U|1845
6TPQ|1|U|A|1846
6TPQ|1|U|U|1847
6TPQ|1|U|A|1848

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2