IL_6TPQ_076

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6TPQ|1|U|C|1865

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_076 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.1309

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6TPQ|1|U|C|1864
6TPQ|1|U|C|1865
6TPQ|1|U|G|1866
6TPQ|1|U|G|1867
*
6TPQ|1|U|C|1929
6TPQ|1|U|G|1930

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2