IL_6TPQ_079

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UUAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_079 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1786

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6TPQ|1|U|U|1878
6TPQ|1|U|U|1879
6TPQ|1|U|A|1880
6TPQ|1|U|A|1881
6TPQ|1|U|G|1882
*
6TPQ|1|U|U|1914
6TPQ|1|U|G|1915
6TPQ|1|U|A|1916
6TPQ|1|U|A|1917
6TPQ|1|U|G|1918

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2