IL_6TPQ_088

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6TPQ|1|U|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_088 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.1387

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6TPQ|1|U|C|2108
6TPQ|1|U|A|2109
6TPQ|1|U|G|2110
*
6TPQ|1|U|U|2263
6TPQ|1|U|G|2264
6TPQ|1|U|G|2265
6TPQ|1|U|G|2266

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2

Chain u

50S ribosomal protein L28