IL_6TPQ_108
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6TPQ|1|U|G|2807
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_108 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.0915
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6TPQ|1|U|U|2663
6TPQ|1|U|U|2664
6TPQ|1|U|G|2665
6TPQ|1|U|A|2666
6TPQ|1|U|G|2667
*
6TPQ|1|U|C|2801
6TPQ|1|U|A|2802
6TPQ|1|U|A|2803
6TPQ|1|U|G|2804
6TPQ|1|U|A|2805
6TPQ|1|U|U|2806
6TPQ|1|U|G|2807
6TPQ|1|U|A|2808
6TPQ|1|U|G|2809
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain c
- 50S ribosomal protein L13
Coloring options: