IL_6TPQ_111
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 6TPQ|1|U|U|2716, 6TPQ|1|U|A|2717
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_111 not in the Motif Atlas
- Homologous match to IL_4WF9_102
- Geometric discrepancy: 0.0793
- The information below is about IL_4WF9_102
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
6TPQ|1|U|U|2714
6TPQ|1|U|G|2715
6TPQ|1|U|U|2716
6TPQ|1|U|A|2717
6TPQ|1|U|C|2718
*
6TPQ|1|U|G|2745
6TPQ|1|U|G|2746
6TPQ|1|U|U|2747
6TPQ|1|U|A|2748
6TPQ|1|U|G|2749
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain g
- 50S ribosomal protein L17
- Chain i
- 50S ribosomal protein L19
Coloring options: