IL_6TPQ_113
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GAUAAG*UGAAGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_113 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.1487
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6TPQ|1|U|G|2764
6TPQ|1|U|A|2765
6TPQ|1|U|U|2766
6TPQ|1|U|A|2767
6TPQ|1|U|A|2768
6TPQ|1|U|G|2769
*
6TPQ|1|U|U|2789
6TPQ|1|U|G|2790
6TPQ|1|U|A|2791
6TPQ|1|U|A|2792
6TPQ|1|U|G|2793
6TPQ|1|U|C|2794
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain a
- 50S ribosomal protein L6
- Chain c
- 50S ribosomal protein L13
- Chain t
- 50S ribosomal protein L36
Coloring options: