IL_6TPQ_123
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- ACGGGACGAACACCGAUAUGC*GAUUU
- Length
- 26 nucleotides
- Bulged bases
- 6TPQ|1|U|U|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_123 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.3274
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6TPQ|1|U|A|54
6TPQ|1|U|C|55
6TPQ|1|U|G|56
6TPQ|1|U|G|57
6TPQ|1|U|G|58
6TPQ|1|U|A|59
6TPQ|1|U|C|60
6TPQ|1|U|G|61
6TPQ|1|U|A|62
6TPQ|1|U|A|63
6TPQ|1|U|C|64
6TPQ|1|U|A|65
6TPQ|1|U|C|66
6TPQ|1|U|C|67
6TPQ|1|U|G|68
6TPQ|1|U|A|69
6TPQ|1|U|U|70
6TPQ|1|U|A|71
6TPQ|1|U|U|72
6TPQ|1|U|G|73
6TPQ|1|U|C|74
*
6TPQ|1|U|G|107
6TPQ|1|U|A|108
6TPQ|1|U|U|109
6TPQ|1|U|U|110
6TPQ|1|U|U|111
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
- Chain v
- 50S ribosomal protein L29
Coloring options: