IL_6U48_001

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_001 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|24
6U48|1|CA|U|25
6U48|1|CA|G|26
6U48|1|CA|G|27
6U48|1|CA|A|28
6U48|1|CA|U|29
6U48|1|CA|G|30
*
6U48|1|CA|C|510
6U48|1|CA|U|511
6U48|1|CA|G|512
6U48|1|CA|A|513
6U48|1|CA|A|514
6U48|1|CA|A|515
6U48|1|CA|C|516

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein bL32

Chain CR

50S ribosomal protein bL20

Chain CT

50S ribosomal protein uL22