IL_6U48_004
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 6U48|1|CA|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6U48_004 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.2689
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6U48|1|CA|G|81
6U48|1|CA|U|82
6U48|1|CA|A|83
6U48|1|CA|A|84
6U48|1|CA|G|85
*
6U48|1|CA|C|97
6U48|1|CA|G|98
6U48|1|CA|U|99
6U48|1|CA|U|100
6U48|1|CA|A|101
6U48|1|CA|U|102
6U48|1|CA|A|103
6U48|1|CA|A|104
6U48|1|CA|C|105
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain CV
- 50S ribosomal protein uL24
- Chain CZ
- 50S ribosomal protein uL29
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