IL_6U48_006

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_006 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0712

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6U48|1|CA|G|188
6U48|1|CA|G|189
6U48|1|CA|A|190
6U48|1|CA|A|191
6U48|1|CA|C|192
6U48|1|CA|U|193
6U48|1|CA|G|194
*
6U48|1|CA|C|201
6U48|1|CA|U|202
6U48|1|CA|A|203
6U48|1|CA|A|204
6U48|1|CA|G|205
6U48|1|CA|U|206
6U48|1|CA|A|207
6U48|1|CA|C|208

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein uL15

Chain CY

50S ribosomal protein bL28