IL_6U48_011

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6U48|1|CA|A|504, 6U48|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_011 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0881

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6U48|1|CA|G|481
6U48|1|CA|A|482
6U48|1|CA|A|483
6U48|1|CA|C|484
*
6U48|1|CA|G|496
6U48|1|CA|A|497
6U48|1|CA|G|498
6U48|1|CA|U|499
6U48|1|CA|G|500
6U48|1|CA|A|501
6U48|1|CA|A|502
6U48|1|CA|A|503
6U48|1|CA|A|504
6U48|1|CA|A|505
6U48|1|CA|G|506
6U48|1|CA|A|507
6U48|1|CA|A|508
6U48|1|CA|C|509

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CT

50S ribosomal protein uL22

Chain CV

50S ribosomal protein uL24