IL_6U48_012

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_012 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.0902

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6U48|1|CA|G|536
6U48|1|CA|G|537
6U48|1|CA|A|538
6U48|1|CA|G|539
*
6U48|1|CA|U|554
6U48|1|CA|G|555
6U48|1|CA|A|556
6U48|1|CA|C|557

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CK

50S ribosomal protein uL13

Chain CR

50S ribosomal protein bL20

Chain CS

50S ribosomal protein bL21