IL_6U48_029

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_029 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3655

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|875
6U48|1|CA|C|876
6U48|1|CA|A|877
6U48|1|CA|A|878
6U48|1|CA|G|879
6U48|1|CA|G|880
*
6U48|1|CA|C|897
6U48|1|CA|C|898
6U48|1|CA|A|899
6U48|1|CA|A|900
6U48|1|CA|C|901
6U48|1|CA|C|902

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein uL16