IL_6U48_033

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6U48|1|CA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_033 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.1091

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6U48|1|CA|G|1011
6U48|1|CA|U|1012
6U48|1|CA|C|1013
*
6U48|1|CA|G|1149
6U48|1|CA|C|1150

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CK

50S ribosomal protein uL13

Chain CR

50S ribosomal protein bL20