IL_6U48_035
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6U48|1|CA|A|1127, 6U48|1|CA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6U48_035 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0649
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6U48|1|CA|G|1024
6U48|1|CA|G|1025
6U48|1|CA|G|1026
6U48|1|CA|A|1027
6U48|1|CA|A|1028
6U48|1|CA|A|1029
6U48|1|CA|C|1030
*
6U48|1|CA|G|1124
6U48|1|CA|G|1125
6U48|1|CA|A|1126
6U48|1|CA|A|1127
6U48|1|CA|G|1128
6U48|1|CA|A|1129
6U48|1|CA|U|1130
6U48|1|CA|G|1131
6U48|1|CA|U|1132
6U48|1|CA|A|1133
6U48|1|CA|A|1134
6U48|1|CA|C|1135
6U48|1|CA|G|1136
6U48|1|CA|G|1137
6U48|1|CA|G|1138
6U48|1|CA|G|1139
6U48|1|CA|C|1140
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C5
- 50S ribosomal protein bL36
- Chain CB
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- 50S ribosomal protein uL3
- Chain CK
- 50S ribosomal protein uL13
- Chain CN
- 50S ribosomal protein uL16
Coloring options: