IL_6U48_042

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

6U48|1|CA|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_042 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1061

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

6U48|1|CA|G|1202
6U48|1|CA|U|1203
6U48|1|CA|A|1204
6U48|1|CA|A|1205
6U48|1|CA|G|1206
*
6U48|1|CA|U|1240
6U48|1|CA|A|1241
6U48|1|CA|U|1242
6U48|1|CA|C|1243

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein uL4

Chain CM

50S ribosomal protein uL15