IL_6U48_050

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6U48|1|CA|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_050 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1516

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6U48|1|CA|C|1417
6U48|1|CA|G|1418
6U48|1|CA|A|1419
6U48|1|CA|A|1420
6U48|1|CA|G|1421
*
6U48|1|CA|C|1577
6U48|1|CA|U|1578
6U48|1|CA|A|1579
6U48|1|CA|A|1580
6U48|1|CA|G|1581

Current chains

Chain CA

23S rRNA

Nearby chains