IL_6U48_062

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6U48|1|CA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_062 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0759

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|A|1669
6U48|1|CA|C|1670
6U48|1|CA|U|1671
6U48|1|CA|A|1672
6U48|1|CA|G|1673
6U48|1|CA|G|1674
*
6U48|1|CA|C|1990
6U48|1|CA|U|1991
6U48|1|CA|G|1992
6U48|1|CA|U|1993

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein uL3

Chain CL

50S ribosomal protein uL14