IL_6U48_063

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6U48|1|CA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_063 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0765

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|C|1686
6U48|1|CA|G|1687
6U48|1|CA|U|1688
6U48|1|CA|A|1689
6U48|1|CA|A|1690
6U48|1|CA|C|1691
*
6U48|1|CA|G|1696
6U48|1|CA|G|1697
6U48|1|CA|A|1698
6U48|1|CA|G|1699
6U48|1|CA|A|1700
6U48|1|CA|A|1701
6U48|1|CA|G|1702

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2