IL_6U48_073

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6U48|1|CA|A|1938, 6U48|1|CA|U|1944, 6U48|1|CA|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_073 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1524

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

6U48|1|CA|C|1934
6U48|1|CA|G|1935
6U48|1|CA|A|1936
6U48|1|CA|A|1937
6U48|1|CA|A|1938
6U48|1|CA|5MU|1939
6U48|1|CA|U|1940
6U48|1|CA|C|1941
6U48|1|CA|C|1942
6U48|1|CA|U|1943
6U48|1|CA|U|1944
6U48|1|CA|G|1945
*
6U48|1|CA|C|1961
6U48|1|CA|5MC|1962
6U48|1|CA|U|1963
6U48|1|CA|G|1964

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2