IL_6U48_080

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_080 not in the Motif Atlas

Homologous match to IL_5J7L_326

Geometric discrepancy: 0.0768

The information below is about IL_5J7L_326

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6U48|1|CA|U|2085
6U48|1|CA|U|2086
6U48|1|CA|G|2087
*
6U48|1|CA|C|2232
6U48|1|CA|U|2233
6U48|1|CA|G|2234

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2

Chain CY

50S ribosomal protein bL28