IL_6U48_088

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6U48|1|CA|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_088 not in the Motif Atlas

Geometric match to IL_9AXU_122

Geometric discrepancy: 0.3949

The information below is about IL_9AXU_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6U48|1|CA|U|2401
6U48|1|CA|U|2402
6U48|1|CA|C|2403
*
6U48|1|CA|G|2414
6U48|1|CA|G|2415

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein bL33

Chain C4

50S ribosomal protein bL35

Chain CM

50S ribosomal protein uL15