IL_6U48_091

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_091 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.1327

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6U48|1|CA|A|2459
6U48|1|CA|U|2460
6U48|1|CA|A|2461
*
6U48|1|CA|U|2489
6U48|1|CA|G|2490
6U48|1|CA|U|2491
6U48|1|CA|U|2492
6U48|1|CA|U|2493

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein uL16