IL_6U48_095

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6U48|1|CA|A|2572, 6U48|1|CA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_095 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.1059

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6U48|1|CA|C|2512
6U48|1|CA|A|2513
*
6U48|1|CA|U|2571
6U48|1|CA|A|2572
6U48|1|CA|C|2573
6U48|1|CA|G|2574

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein uL3

Chain CK

50S ribosomal protein uL13