IL_6U48_105

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_105 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.1157

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

6U48|1|CA|C|2806
6U48|1|CA|U|2807
6U48|1|CA|G|2808
6U48|1|CA|A|2809
6U48|1|CA|A|2810
6U48|1|CA|G|2811
*
6U48|1|CA|C|2889
6U48|1|CA|G|2890
6U48|1|CA|U|2891
6U48|1|CA|G|2892

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein bL32

Chain CD

50S ribosomal protein uL3

Chain CT

50S ribosomal protein uL22