IL_6U48_109

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

6U48|1|CB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_109 not in the Motif Atlas

Homologous match to IL_5J7L_355

Geometric discrepancy: 0.1742

The information below is about IL_5J7L_355

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6U48|1|CB|C|17
6U48|1|CB|G|18
*
6U48|1|CB|U|65
6U48|1|CB|A|66
6U48|1|CB|G|67

Current chains

Chain CB

5S rRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CP

50S ribosomal protein uL18