IL_6U48_116

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6U48|1|CA|U|846, 6U48|1|CA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_116 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.2684

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6U48|1|CA|A|844
6U48|1|CA|A|845
6U48|1|CA|U|846
6U48|1|CA|U|847
6U48|1|CA|C|848
*
6U48|1|CA|G|930
6U48|1|CA|U|931
6U48|1|CA|U|932
6U48|1|CA|A|933
6U48|1|CA|U|934

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein uL30