IL_6U48_121

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_121 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1003

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|U|1864
6U48|1|CA|U|1865
6U48|1|CA|A|1866
6U48|1|CA|G|1867
*
6U48|1|CA|C|1874
6U48|1|CA|G|1875
6U48|1|CA|A|1876
6U48|1|CA|A|1877
6U48|1|CA|G|1878

Current chains

Chain CA

23S rRNA

Nearby chains