IL_6U48_122

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GU(G7M)*CC

Length

5 nucleotides

Bulged bases

6U48|1|CA|U|2068

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_122 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.0926

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6U48|1|CA|G|2067
6U48|1|CA|U|2068
6U48|1|CA|G7M|2069
*
6U48|1|CA|C|2442
6U48|1|CA|C|2443

Current chains

Chain CA

23S rRNA

Nearby chains

Chain A

phazolicin

Chain CE

50S ribosomal protein uL4

Chain CM

50S ribosomal protein uL15