IL_6U48_124

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

6U48|1|CA|A|2163, 6U48|1|CA|C|2164, 6U48|1|CA|G|2168, 6U48|1|CA|A|2169, 6U48|1|CA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6U48|1|CA|G|2124
6U48|1|CA|G|2125
6U48|1|CA|A|2126
6U48|1|CA|G|2127
*
6U48|1|CA|C|2161
6U48|1|CA|G|2162
6U48|1|CA|A|2163
6U48|1|CA|C|2164
6U48|1|CA|C|2165
6U48|1|CA|U|2166
6U48|1|CA|U|2167
6U48|1|CA|G|2168
6U48|1|CA|A|2169
6U48|1|CA|A|2170
6U48|1|CA|A|2171
6U48|1|CA|U|2172
6U48|1|CA|A|2173
6U48|1|CA|C|2174

Current chains

Chain CA

23S rRNA

Nearby chains