IL_6U79_014

3D structure

PDB id

6U79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of 5' UTR stem loop B from West Nile Virus

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U79_014 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.3991

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

6U79|7|A|A|12
6U79|7|A|C|13
*
6U79|7|A|G|23
6U79|7|A|A|24
6U79|7|A|U|25

Current chains

Chain A

5' UTR region stem loop

Nearby chains