IL_6UCQ_081

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6UCQ|1|1A|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UCQ_081 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.2725

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6UCQ|1|1A|G|2110
6UCQ|1|1A|C|2111
6UCQ|1|1A|G|2112
6UCQ|1|1A|U|2113
6UCQ|1|1A|A|2114
6UCQ|1|1A|G|2115
6UCQ|1|1A|G|2116
6UCQ|1|1A|A|2117
6UCQ|1|1A|U|2118
6UCQ|1|1A|A|2119
6UCQ|1|1A|G|2120
*
6UCQ|1|1A|C|2178
6UCQ|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA