IL_6UCQ_212

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6UCQ|1|2A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UCQ_212 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1284

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6UCQ|1|2A|C|1208
6UCQ|1|2A|G|1209
6UCQ|1|2A|A|1210
6UCQ|1|2A|U|1211
6UCQ|1|2A|G|1212
6UCQ|1|2A|A|1213
6UCQ|1|2A|A|1214
6UCQ|1|2A|G|1215
*
6UCQ|1|2A|U|1234
6UCQ|1|2A|G|1235
6UCQ|1|2A|G|1236
6UCQ|1|2A|A|1237
6UCQ|1|2A|G|1238

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20