IL_6UCQ_310

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6UCQ|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UCQ_310 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1145

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6UCQ|1|2a|G|683
6UCQ|1|2a|A|684
6UCQ|1|2a|G|685
6UCQ|1|2a|U|686
6UCQ|1|2a|A|687
6UCQ|1|2a|G|688
*
6UCQ|1|2a|C|699
6UCQ|1|2a|G|700
6UCQ|1|2a|C|701
6UCQ|1|2a|A|702
6UCQ|1|2a|G|703
6UCQ|1|2a|A|704
6UCQ|1|2a|U|705
6UCQ|1|2a|A|706
6UCQ|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11