IL_6UCQ_356

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCACUG*CAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UCQ_356 not in the Motif Atlas

Geometric match to IL_4V9F_035

Geometric discrepancy: 0.2121

The information below is about IL_4V9F_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6UCQ|1|2A|G|864
6UCQ|1|2A|C|865
6UCQ|1|2A|A|866
6UCQ|1|2A|C|867
6UCQ|1|2A|U|868
6UCQ|1|2A|G|869
*
6UCQ|1|2A|C|908
6UCQ|1|2A|A|909
6UCQ|1|2A|A|910
6UCQ|1|2A|A|911
6UCQ|1|2A|C|912

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25