IL_6UO1_017

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6UO1|1|1A|G|801, 6UO1|1|1A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_017 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0627

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6UO1|1|1A|G|674
6UO1|1|1A|A|675
6UO1|1|1A|A|676
6UO1|1|1A|A|677
6UO1|1|1A|C|678
*
6UO1|1|1A|G|799
6UO1|1|1A|A|800
6UO1|1|1A|G|801
6UO1|1|1A|A|802
6UO1|1|1A|U|803
6UO1|1|1A|A|804
6UO1|1|1A|G|805
6UO1|1|1A|C|806

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15