IL_6UO1_048

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6UO1|1|1A|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_048 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0583

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6UO1|1|1A|C|1351
6UO1|1|1A|U|1352
6UO1|1|1A|A|1353
6UO1|1|1A|A|1354
6UO1|1|1A|G|1355
*
6UO1|1|1A|C|1376
6UO1|1|1A|G|1377
6UO1|1|1A|A|1378
6UO1|1|1A|A|1379
6UO1|1|1A|G|1380

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2