IL_6UO1_164

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

6UO1|1|1a|A|1503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_164 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1025

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6UO1|1|1a|C|1399
6UO1|1|1a|5MC|1400
6UO1|1|1a|G|1401
*
6UO1|1|1a|C|1501
6UO1|1|1a|A|1502
6UO1|1|1a|A|1503
6UO1|1|1a|G|1504

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1v

mRNA

Chain 1x

Transfer RNA; tRNA