IL_6UO1_180

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

6UO1|1|2A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_180 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.5441

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

6UO1|1|2A|C|272|||J
6UO1|1|2A|G|274
6UO1|1|2A|G|275
6UO1|1|2A|A|276
6UO1|1|2A|C|277
6UO1|1|2A|A|278
6UO1|1|2A|C|279
*
6UO1|1|2A|G|361
6UO1|1|2A|U|362
6UO1|1|2A|G|363

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains