IL_6UO1_218

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_218 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1068

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6UO1|1|2A|U|1357
6UO1|1|2A|G|1358
6UO1|1|2A|A|1359
6UO1|1|2A|A|1360
6UO1|1|2A|G|1361
*
6UO1|1|2A|C|1370
6UO1|1|2A|G|1371
6UO1|1|2A|U|1372
6UO1|1|2A|A|1373
6UO1|1|2A|G|1374

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2