IL_6UO1_250

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_250 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3765

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6UO1|1|2A|G|2110
6UO1|1|2A|C|2111
6UO1|1|2A|G|2112
6UO1|1|2A|U|2113
6UO1|1|2A|A|2114
6UO1|1|2A|G|2115
6UO1|1|2A|G|2116
6UO1|1|2A|A|2117
6UO1|1|2A|U|2118
6UO1|1|2A|A|2119
6UO1|1|2A|G|2120
*
6UO1|1|2A|C|2178
6UO1|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2y

Transfer RNA; tRNA