IL_6UO1_270

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

6UO1|1|2A|U|2689, 6UO1|1|2A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_270 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0836

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6UO1|1|2A|U|2687
6UO1|1|2A|U|2688
6UO1|1|2A|U|2689
6UO1|1|2A|C|2690
6UO1|1|2A|C|2691
*
6UO1|1|2A|G|2718
6UO1|1|2A|G|2719
6UO1|1|2A|U|2720
6UO1|1|2A|A|2721
6UO1|1|2A|G|2722

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19