IL_6UO1_343
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGCU*AAACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6UO1_343 not in the Motif Atlas
- Geometric match to IL_8GLP_328
- Geometric discrepancy: 0.2836
- The information below is about IL_8GLP_328
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20358.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6UO1|1|1A|G|874
6UO1|1|1A|G|875
6UO1|1|1A|C|876
6UO1|1|1A|U|877
*
6UO1|1|1A|A|899
6UO1|1|1A|A|900
6UO1|1|1A|A|901
6UO1|1|1A|C|902
6UO1|1|1A|C|903
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
- Chain 1w
- Transfer RNA; tRNA
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