IL_6UZ7_011

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAUC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6UZ7|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1775

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6UZ7|1|2|G|142
6UZ7|1|2|G|143
6UZ7|1|2|A|144
6UZ7|1|2|U|145
6UZ7|1|2|A|146
6UZ7|1|2|U|147
6UZ7|1|2|C|148
*
6UZ7|1|2|G|164
6UZ7|1|2|C|165
6UZ7|1|2|U|166
6UZ7|1|2|A|167
6UZ7|1|2|A|168
6UZ7|1|2|U|169
6UZ7|1|2|A|170
6UZ7|1|2|C|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24