IL_6UZ7_020

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6UZ7|1|2|U|379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_020 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1265

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6UZ7|1|2|G|362
6UZ7|1|2|G|363
6UZ7|1|2|G|364
*
6UZ7|1|2|C|375
6UZ7|1|2|G|376
6UZ7|1|2|A|377
6UZ7|1|2|U|378
6UZ7|1|2|U|379
6UZ7|1|2|C|380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain X

RPS23