IL_6UZ7_022

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_022 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.3474

The information below is about IL_4V88_406

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6UZ7|1|2|C|410
6UZ7|1|2|A|411
6UZ7|1|2|U|412
*
6UZ7|1|2|A|419
6UZ7|1|2|A|420
6UZ7|1|2|G|421

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

KLLA0F23265p

Chain AV

KLLA0E06997p

Chain G

40S ribosomal protein S6