IL_6UZ7_027

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_027 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1749

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6UZ7|1|2|A|549
6UZ7|1|2|G|550
6UZ7|1|2|G|551
6UZ7|1|2|G|552
6UZ7|1|2|C|553
6UZ7|1|2|A|554
6UZ7|1|2|A|555
6UZ7|1|2|G|556
*
6UZ7|1|2|C|586
6UZ7|1|2|U|587

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

KLLA0F09812p

Chain J

KLLA0E23673p

Chain e

40S ribosomal protein S30